We present FARCI (Fast and Robust Connectome Inference), a numerically efficient and a user-friendly implementation of neuronal connectome from two photon calcium imaging data. FARCI outputs pairwise association matrix, inferred network matrix, circular graph of the neuronal connectome and, when spatial information is available, neuronal connectome based on actual position of neurons. . These analyses can be applied individually or in a pipeline.
Installation and Usage
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